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Spectral–Spatial Machine Learning for Early Detection of Dutch Elm Disease Using Hyperspectral Leaf Imaging
Forest health is under mounting pressure from diseases driven by invasive pathogens, and the ability to detect these diseases early and precisely is vital for targeted, prompt forest management. Breakthroughs in spectral imaging and artificial intelligence have paved the way for novel approaches to plant disease identification in both crop and tree species. The present study employed the Dutch elm disease (DED; caused by Ophiostoma novo-ulmi) and American elm (Ulmus americana) pathosystem as a model to test the efficacy of two custom-fabricated, high-precision, portable hyper- and multispectral leaf scanners, paired with machine learning, as innovative instruments for forest disease surveillance. Hyper- and multispectral imagery was collected from leaves of American elm genotypes with varying degrees of disease susceptibility following mock inoculation and inoculation with O. novo-ulmi in controlled greenhouse conditions. Both classical machine learning and cutting-edge deep learning architectures were trained on extracted spectra and directly on spectral image volumes. Deep learning frameworks that leverage combined spectral and spatial information from high-definition spectral leaf images surpass classical machine learning approaches that rely exclusively on spectral data for DED identification. Within the deep learning framework, leaf margins and symptomatic lesions were accentuated as discriminative spatial cues for separating leaves originating from inoculated versus mock-inoculated specimens. Furthermore, the spectral and spatial signature profiles uncovered by the machine learning-based models corresponded to the DED susceptibility levels of the elm genotypes. While supplementary investigations are warranted to gauge transferability across other pathosystems, hyper- and multispectral leaf scanners integrated with machine learning show considerable promise as emerging tools for disease phenotyping in tree species.
Journal of Intelligent Agriculture and Food Systems
Original Research | Open access | 15 March 2025 | Article: 107

Deep Learning Approaches for Temperature-Driven Estimation of Reference Evapotranspiration
Properly managing water application in urban plantings is essential throughout arid and semi-arid regions and depends upon consistently accurate calculations of reference evapotranspiration (ETo). The meteorological observations obtainable in city landscapes, however, are rarely sufficient to apply the standard Penman-Monteith methodology for ETo derivation. Intelligent landscape irrigation controllers thus often rely on temperature-driven ETo approximations to automate watering schedules. The present study is directed at crafting deep learning temperature-based ETo predictors and contrasting their accuracy against two widely adopted empirical temperature-based formulas, specifically the FAO Blaney and Criddle (BC) and Hargreaves and Samani (HS). A complementary, freely available, and intuitive software utility, DeepET, was also developed based on the highest-performing deep learning predictors produced in this work. Four classes of artificial neural network (ANN) predictors were assembled, one group operating on raw weather observations and a second group utilizing wavelet-transformed reconstructed signals as input features. Additionally, long short-term memory (LSTM) recurrent neural network (NN) and one-dimensional convolutional neural network (CNN) predictors were built. The dataset underpinning this work was sourced from 101 operational California Irrigation Management Information System (CIMIS) weather stations, yielding more than 725,000 data points spanning 1985-2019. All predictors were benchmarked against the officially reported CIMIS ETo. When tested on previously unseen station records, the temperature-fed DL (Deep Learning) predictors yielded mean absolute errors that were 15%–20% lower than those from the locally calibrated HS equation. Feeding reconstructed wavelet-transform signals into the ANN predictors did not yield any measurable gain. Our findings suggest that DL-based predictors constitute a compelling approach to improving ETo accuracy in urban settings when only temperature readings are available. The DeepET utility is reachable from the Haghverdi Water Management Group portal: http://www. ucrwater.com/software-and-tools.html.
Journal of Intelligent Agriculture and Food Systems
Original Research | Open access | 15 March 2025 | Article: 113

Machine Learning-Based Classification of Dry Bean Seeds Enhanced by Data Mining Techniques
In agricultural production and yield, product quality certification is a critical procedure. Older methodologies for grading seed quality suffer from drawbacks such as overly complex workflows, limited accuracy, and slow inspection rates at high output volumes. Automated sorting methods based on computer vision and machine learning offer swift, high-capacity alternatives. Even with the substantial breakthroughs in modern automatic classification models, there remains a need to advance these systems by integrating other approaches. This study details the creation of a computer vision platform for autonomously sorting diverse seed types. It relies on machine learning frameworks and data mining procedures, using a collection of geometric descriptors of bean seeds derived from binary imagery. A comparison was drawn among three machine learning strategies: Random Forest (RF), Support Vector Machine (SVM), and K-Nearest Neighbors (KNN). The workflow also included Principal Component Analysis (PCA), hyperparameter optimization within machine learning algorithms, and dataset rectification using the Synthetic Minority Oversampling Technique (SMOTE). Findings revealed that data mining operations—namely Principal Component Analysis, hyperparameter optimization, and the SMOTE approach—improve the quality of classification outputs. The KNN classifier delivered the strongest showing, attaining close to 95% accuracy alongside 96% precision and recall. The top-tier outcomes were achieved by performing hyperparameter optimization and applying the SMOTE method during data preparation, resulting in a gain of roughly 2.6%. The results validated that integrating data mining into the preprocessing stage and machine learning classification approaches can effectively and swiftly improve sorting accuracy and facilitate automated selection of bean seeds from digital images. This assists small-scale growers and agricultural overseers in making decisions about seed selection to increase yields.
Journal of Intelligent Agriculture and Food Systems
Original Research | Open access | 15 March 2025 | Article: 115

Machine Learning–Based Nutrient Optimization for Plant Growth in Aquaponic Irrigation Using Small Training Datasets
In light of ongoing trends in metropolitan farming and global climate shifts, there is a growing need for alternative plant cultivation strategies that can operate independently of soil. Aquaponic and hydroponic growing methods have proven workable replacements, yet the scarcity of streamlined, ideal procedures for watering and nutrient delivery curtails their deployment at a mass commercial scale. The primary objective of this investigation was to develop statistical techniques and Machine Learning models to adjust nutrient levels in aquaponic irrigation systems in response to crop demand, thereby securing peak plant performance and facilitating wider commercial uptake of aquaponic farming. A core difficulty in crafting these models is the thinness of available data, which calls for the application of Bolstered error estimation methodologies. This paper assesses a range of linear and non-linear algorithms conditioned on comparatively small data sets using bolstered error estimation techniques to identify the superior approach for guiding nutrient control decisions in hydroponic contexts. Upon conducting multiple tests on the data, it was concluded that the Semi-Bolstered Resubstitution Error estimation strategy yields the best results in our scenario, using a Linear Support Vector Machine as the categorizer with a penalty factor of 1. A series of suggested directives was developed as a Decision Support System, derived from the Machine Learning model’s outputs, and verified against the baseline framework’s findings. Moreover, the constructive influence of the recommended nutrient mixtures on plant growth in aquaponic conditions is examined in detail.
Journal of Intelligent Agriculture and Food Systems
Original Research | Open access | 15 September 2025 | Article: 124

Detection of Cattle Urination and Defecation Events Using Non-Invasive Accelerometer Sensors and Machine Learning
Leaching losses of nitrogen (N) from grazed pasture are driven predominantly by urinary N deposited by cattle. This work aimed to use non-invasive accelerometer-based sensors to capture the timing and duration of urination and defecation events in grazing cattle. To register the back arching motion that accompanies urination and defecation, each cow was fitted with two accelerometer sensors. Experiments took place outdoors under grazing conditions during two seasons—autumn and summer—and captured a total of 160 urination events. Across the majority of these events, the tilt angle was observed to shift within a range of 8 to 22.5 degrees. Using 18 selected features that characterise a cow's back arching, ensemble machine learning classifiers were constructed to recognise urination and defecation. The urination classifier delivered an F1 score of 0.80 (harmonic mean computed from a precision of 0.82 and a sensitivity of 0.78). In contrast, the defecation classifier gave an F1 score of 0.73 (calculated from 408 hours of recordings made between 9 a.m. and 3 p.m. from 19 cows). Predictive models for urination event duration were statistically significant. Still, they underperformed, with low explanatory power, in part because the relationship between the duration of back arching and the duration of urine passage was only moderate (R² values of 0.29 in autumn and 0.47 in summer). The work highlights that non-invasive accelerometer sensing has real promise for capturing individual cows' urination patterns and for generating animal-level information that farm decision support systems (such as those addressing urine-N excretion) and managerial actions (such as selective culling or breeding) could use as input.
Journal of Intelligent Agriculture and Food Systems
Original Research | Open access | 15 September 2025 | Article: 125

Machine Learning for Sustainable Agri-Food Transitions: A Systematic Review of Environmental, Economic, and Social Impact Pathways
Machine learning is increasingly applied across agri-food systems to support prediction, classification, optimisation, monitoring, and decision-making. These applications now extend from farm-level production to processing, logistics, consumption, and food-waste management. As data-intensive agriculture expands, machine learning is often presented as an enabling technology for sustainable agri-food transitions. Despite this promise, the sustainability evidence base remains fragmented. Many studies report improvements in model accuracy, prediction performance, or operational decision support, but they do not always specify how these technical gains translate into environmental, economic, or social outcomes. This creates uncertainty about whether machine learning contributes to sustainability transitions directly, indirectly, or only under particular implementation conditions. This systematic review examines how machine learning contributes to sustainable agri-food transitions through environmental, economic, and social impact pathways. It focuses on the relationship between machine learning methods, agri-food applications, and sustainability-relevant outcomes rather than treating model performance as an end in itself. The review asks where evidence is strongest, where it remains indirect, and how different pathways vary across production, processing, distribution, consumption, waste reduction, and governance. The review finds that environmental and economic pathways are more developed than social and equity pathways. Evidence is strongest where machine learning supports precision input management, yield forecasting, irrigation decision support, operational efficiency, supply-chain analytics, and food-waste reduction. However, stronger longitudinal evaluation, causal assessment, life-cycle integration, participatory design, and equity-sensitive governance are needed before machine learning can be judged as a reliable driver of sustainable agri-food transitions.
Journal of Intelligent Agriculture and Food Systems
Review | Open access | 15 March 2026 | Article: 29

Data Science in Precision Agriculture: A Bibliometric and Thematic Review of Research Evolution, Knowledge Structures, and Emerging Frontiers
Data science has become a central analytical foundation of precision agriculture, enabling researchers and practitioners to transform heterogeneous farm, crop, soil, climate, machinery, sensor, and remote-sensing data into decision-relevant knowledge. This original bibliometric and thematic review examines how precision agriculture data science has evolved as a research field, how its knowledge structures are organized, and which methodological and application frontiers are shaping its future direction. The review follows a transparent bibliometric logic by distinguishing database searching, eligibility screening, metadata cleaning, keyword normalization, bibliometric indicators, thematic mapping, and interpretive synthesis. Because verified database-export counts were not available in the present working environment, the manuscript does not report invented publication totals, citation rankings, cluster sizes, or network metrics. Instead, it develops a cautious bibliometric-thematic framework grounded in the approved reference set and in clearly stated methodological safeguards. The review focuses on research evolution from early sensor analytics and remote observation toward machine learning, deep learning, big data, IoT-enabled systems, data fusion, decision support, and sustainable smart farming. It also examines knowledge structures around journals, keywords, co-occurrence logic, thematic clusters, and emerging research fronts. The main contribution is an integrated synthesis of precision agriculture data science as a field shaped by technical innovation, methodological fragmentation, data-quality constraints, interoperability challenges, explainability needs, reproducibility demands, and farmer-centered implementation concerns. The review provides a future agenda for more robust, transparent, usable, and responsible data science in precision agriculture.
Journal of Smart Farming, Precision Agriculture and Data Science
Review | Open access | 25 May 2025 | Article: 83

Remote Sensing, Machine Learning, and Smart Farming: An Umbrella Review of Review-Level Evidence for Crop Monitoring, Disease Detection, and Yield Forecasting
Remote sensing and machine learning have become prominent components of smart farming research, generating an expanding body of review literature across agricultural monitoring and prediction applications. This umbrella review synthesises review-level evidence concerning crop monitoring, disease detection, yield forecasting, and decision support while examining the methodological conditions that shape evidence strength and transferability. Peer-reviewed systematic reviews, scoping reviews, structured reviews, surveys, meta-reviews, and other eligible review-level articles were identified through searches of major academic databases and publisher platforms. Evidence was organised by application domain, sensing modality, analytical method, validation design, generalisation, uncertainty, reproducibility, and decision-support relevance. Crop-monitoring reviews describe extensive use of satellite, unmanned aerial vehicle, multispectral, hyperspectral, thermal, and multimodal data for crop mapping, growth assessment, phenotyping, stress monitoring, and related applications. Disease-detection reviews report rapid expansion of image-based machine learning and deep learning, but repeatedly identify data scarcity, class imbalance, curated-image dependence, and limited cross-context validation. Yield-forecasting reviews identify recurring integration of remote sensing, weather, soil, crop-model, and management information, although forecast horizons, spatial and temporal validation, uncertainty communication, and decision relevance remain inconsistent. Across domains, reported technical promise is moderated by heterogeneous datasets, benchmark inconsistency, review overlap, incomplete reproducibility, and limited evidence of transfer across crops, regions, seasons, and acquisition conditions. Review-level evidence supports a substantial research opportunity for remote sensing and machine learning in smart farming, but it does not independently establish field readiness, diagnostic reliability, operational forecasting performance, or deployment readiness. Stronger review reporting, external validation, transparent benchmarking, uncertainty assessment, reproducible workflows, and responsible decision-support evaluation are required.
Journal of Smart Farming, Precision Agriculture and Data Science
Review | Open access | 25 May 2026 | Article: 101