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Intelligent agricultural systems increasingly combine sensors, artificial intelligence, automation, robotics, remote sensing, decision support, digital platforms, and data infrastructures to support farm management. These systems promise more precise monitoring, faster decisions, and improved resource use. Yet their practical value depends on how they enter the social and ecological realities of farming. A persistent problem in intelligent agriculture is that systems are often evaluated through technical performance, productivity, efficiency, or predictive capability. Such evaluations can understate whether technologies fit farmer judgement, local work routines, ecological variability, and institutional conditions. When these dimensions are treated as secondary, intelligent systems may intensify rather than resolve farm-system tensions. This article develops a theory of the socio-technical farm based on human–technology–ecology alignment. The central argument is that intelligent agricultural systems become effective, responsible, and sustainable only when human actors, technological functions, and ecological processes are mutually coordinated. Alignment is therefore theorised as an active, situated, and adaptive relationship rather than as a static design feature. The theory-building synthesis integrates scholarship on intelligent agriculture, digital farming, socio-technical systems, human-centred design, ecological feedback, farm decision-making, and responsible innovation. It defines core constructs, explains alignment mechanisms, identifies misalignment risks, and specifies boundary conditions. The article positions farms as dynamic systems in which judgement, data, machinery, organisms, soil, weather, markets, and governance interact. The proposed theory contributes a farmer-centred and ecology-aware account of intelligent agriculture. It explains how adaptive feedback, contextual design, interpretability, advisory support, accountable governance, and ecological embeddedness shape whether intelligent systems strengthen or weaken farm performance. The theory redirects evaluation from automation alone toward aligned socio-technical design that supports human agency, technological responsibility, and ecological care.